RNAsoft
- Software
for RNA/DNA secondary structure prediction and design
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[ Conditions
of use | About RNAsoft ]
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AveRNA
combines the RNA secondary structures predicted by different algorithms to increase the overall accuracy |
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PairFold
predicts the minimum free energy secondary structure formed by two input DNA or RNA molecules. PairFold
can be used, for example, to predict interactions between a probe and
target RNA molecule, or between pairs of strands in biomolecular
nanostructures.
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CombFold
predicts which strand, out of a combinatorial set formed from DNA or
RNA input strands, folds to a secondary structure with the lowest
minimum free energy. CombFold can, for example, efficiently test that
no strand in a large tag library forms unwanted secondary structure.
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RNA Designer
designs an RNA sequence that folds to a given input secondary
structure. The tool is intended for designers of RNA molecules with
particular structural or functional properties.
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HotKnots
predicts RNA secondary structures with pseudoknots. The tool is intended for use of short RNA sequences that are expected to form pseudoknots.
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