RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00044 RNase P RNA, Carboxydothermus hydrogenoformans RNase P RNA Unknown RNase P Database Carboxydothermus hydrogenoformans 331 ASE_00046 RNase P RNA, Campylobacter jejuni, strain NCTC 11168 RNase P RNA Unknown RNase P Database Campylobacter jejuni, strain NCTC 11168 318 ASE_00047 RNase P RNA, Chlorobium limicola, strain thiosulfatophilum RNase P RNA Unknown RNase P Database Chlorobium limicola, strain thiosulfatophilum 386 ASE_00049 RNase P RNA, Chlamydia muridarum (trachomatis), strain MoPn RNase P RNA Unknown RNase P Database Chlamydia muridarum (trachomatis), strain MoPn 395 ASE_00050 RNase P RNA, Chlamydia muridarum (trachomatis), strain SFPD RNase P RNA Unknown RNase P Database Chlamydia muridarum (trachomatis), strain SFPD 395 ASE_00052 RNase P RNA, Cyanophora paradoxa RNase P RNA Unknown RNase P Database Cyanophora paradoxa 351 ASE_00053 RNase P RNA, Chlamydia pecorum, strain E58 RNase P RNA Unknown RNase P Database Chlamydia pecorum, strain E58 399 ASE_00054 RNase P RNA, Chlamydia pecorum, strain H3 RNase P RNA Unknown RNase P Database Chlamydia pecorum, strain H3 399 ASE_00055 RNase P RNA, Chlamydia pecorum, strain AB10 RNase P RNA Unknown RNase P Database Chlamydia pecorum, strain AB10 327 ASE_00056 RNase P RNA, Chlamydia pecorum, strain IPA RNase P RNA Unknown RNase P Database Chlamydia pecorum, strain IPA 249

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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