RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: 23S Ribosomal RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 205 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00646 CRYSTAL STRUCTURE OF THE WILD TYPE RIBOSOME FROM E. COLI, 50S SUBUNIT OF 70S RIBOSOME. THIS FILE, 1P 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1PNY 2943 PDB_00651 CRYSTAL STRUCTURE OF CCDAP-PUROMYCIN BOUND AT THE PEPTIDYL TRANSFERASE CENTER OF THE 50S RIBOSOMAL S 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1Q7Y 2880 PDB_00652 CRYSTAL STRUCTURE OF MINIHELIX WITH 3' PUROMYCIN BOUND TO A- SITE OF THE 50S RIBOSOMAL SUBUNIT. 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1Q81 2879 PDB_00653 CRYSTAL STRUCTURE OF CC-PUROMYCIN BOUND TO THE A-SITE OF THE 50S RIBOSOMAL SUBUNIT 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1Q82 2879 PDB_00654 CRYSTAL STRUCTURE OF CCA-PHE-CAP-BIOTIN BOUND SIMULTANEOUSLY AT HALF OCCUPANCY TO BOTH THE A-SITE AN 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1Q86 2882 PDB_00675 STRUCTURE OF A DEACYLATED TRNA MINIHELIX BOUND TO THE E SITE OF THE LARGE RIBOSOMAL SUBUNIT OF HALOA 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1QVF 2888 PDB_00676 STRUCTURE OF CCA OLIGONUCLEOTIDE BOUND TO THE TRNA BINDING SITES OF THE LARGE RIBOSOMAL SUBUNIT OF H 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1QVG 2885 PDB_00704 STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FO 23S rRNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 1S1I 2916 PDB_00707 REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESO 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 1S72 2876 PDB_00719 COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRIST 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 1SM1 2884

Analyse the 205 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 205 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 205 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia