RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: 23S Ribosomal RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 205 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01089 STRUCTURE OF THE 50S SUBUNIT OF A PRE-TRANSLOCATIONAL E. COLI RIBOSOME OBTAINED BY FITTING ATOMIC MO 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2GYA 2848 PDB_01091 STRUCTURE OF THE 50S SUBUNIT OF A SECM-STALLED E. COLI RIBOSOME COMPLEX OBTAINED BY FITTING ATOMIC M 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2GYC 2848 PDB_01098 THE NMR STRUCTURE OF AN INTERNAL LOOP FROM 23S RIBOSOMAL RNA OF DEINOCOCCUS RADIODURANS DIFFERS FROM 23S rRNA Unknown RCSB Protein Data Bank 2H49 18 PDB_01102 CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME SHOWING HOW THE 16S 3'-END MIMICKS MRNA E 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2HGJ 3012 PDB_01104 CRYSTAL STRUCTURE OF THE 70S THERMUS THERMOPHILUS RIBOSOME WITH TRANSLOCATED AND ROTATED SHINE-DALGA 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2HGQ 3012 PDB_01106 70S T.TH. RIBOSOME FUNCTIONAL COMPLEX WITH MRNA AND E- AND P-SITE TRNAS AT 4.5A. THIS ENTRY 2HGU CON 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2HGU 3012 PDB_01121 CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FI 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2I2T 2958 PDB_01123 CRYSTAL STRUCTURE OF RIBOSOME WITH MESSENGER RNA AND THE ANTICODON STEM-LOOP OF P-SITE TRNA. THIS FI 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2I2V 2958 PDB_01140 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 2 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2J01 2891 PDB_01142 STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME COMPLEXED WITH MRNA, TRNA AND PAROMOMYCIN (PART 4 23S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2J03 2891

Analyse the 205 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 205 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 205 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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