RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Group I Intron Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 152 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00015 b.I1.e.M.anisopliae.2.E.LSU.2066 GI Intron Unknown Gutell Lab CRW Site b.I1.e.M.anisopliae.2.E.LSU.2066 429 CRW_00016 b.I1.e.M.anisopliae.3.C1.LSU.1921 GI Intron Unknown Gutell Lab CRW Site b.I1.e.M.anisopliae.3.C1.LSU.1921 394 CRW_00017 b.I1.e.M.anisopliae.4.E.LSU.2066 GI Intron Unknown Gutell Lab CRW Site b.I1.e.M.anisopliae.4.E.LSU.2066 430 CRW_00018 b.I1.e.P.leucosticta.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.P.leucosticta.C1.SSU.516 605 CRW_00019 b.I1.e.T.thermophila.C1.LSU.1925 GI Intron Tetrahymena thermophila Gutell Lab CRW Site b.I1.e.T.thermophila.C1.LSU.1925 506 CRW_00586 s.I1.e.T.thermophila.C1.LSU.1925.schem GI Intron Tetrahymena thermophila Gutell Lab CRW Site s.I1.e.T.thermophila.C1.LSU.1925.schem 506 CRW_00604 a.I1.b.Bacteriophage.SP01.A2.DP.g31 GI Intron Unknown Gutell Lab CRW Site a.I1.b.Bacteriophage.SP01.A2.DP.g31 908 CRW_00605 a.I1.b.coliphage.T4.A2.NRDB GI Intron Unknown Gutell Lab CRW Site a.I1.b.coliphage.T4.A2.NRDB 607 CRW_00606 a.I1.b.coliphage.T4.A2.NRDD GI Intron Unknown Gutell Lab CRW Site a.I1.b.coliphage.T4.A2.NRDD 1058 CRW_00607 a.I1.b.coliphage.T4.A2.TD GI Intron Unknown Gutell Lab CRW Site a.I1.b.coliphage.T4.A2.TD 1036

Analyse the 152 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 152 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 152 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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