RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Group II Intron Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 42 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00001 a.I2.m.S.cerevisiae.A.OX1.i1 GII Intron Saccharomyces cerevisiae Gutell Lab CRW Site a.I2.m.S.cerevisiae.A.OX1.i1 2520 CRW_00002 a.I2.m.S.cerevisiae.B.OX1.i5 GII Intron Saccharomyces cerevisiae Gutell Lab CRW Site a.I2.m.S.cerevisiae.B.OX1.i5 905 CRW_00574 h.I2.m.S.cerevisiae.A.OX1.i1.hlxnum GII Intron Saccharomyces cerevisiae Gutell Lab CRW Site h.I2.m.S.cerevisiae.A.OX1.i1.hlxnum 2520 CRW_00575 h.I2.m.S.cerevisiae.B.OX1.i5.hlxnum GII Intron Unknown Gutell Lab CRW Site h.I2.m.S.cerevisiae.B.OX1.i5.hlxnum 905 CRW_00587 s.I2.m.S.cerevisiae.A.OX1.i1.schem GII Intron Saccharomyces cerevisiae Gutell Lab CRW Site s.I2.m.S.cerevisiae.A.OX1.i1.schem 2520 CRW_00588 s.I2.m.S.cerevisiae.B.OX1.i5.schem GII Intron Unknown Gutell Lab CRW Site s.I2.m.S.cerevisiae.B.OX1.i5.schem 905 CRW_00724 a.I2.b.C.sp.B.TBD.i5 GII Intron Unknown Gutell Lab CRW Site a.I2.b.C.sp.B.TBD.i5 2543 CRW_00725 a.I2.b.E.coli.A.TBD.i1 GII Intron Escherichia coli Gutell Lab CRW Site a.I2.b.E.coli.A.TBD.i1 1979 CRW_00726 a.I2.b.L.lactis.A.LtrB.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.b.L.lactis.A.LtrB.i1 2600 CRW_00727 a.I2.c.N.tabacum.A.A6.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.c.N.tabacum.A.A6.i1 780

Analyse the 42 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 42 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 42 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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