RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Group II Intron Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 42 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00748 a.I2.m.P.hybrida.A.OX2.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.m.P.hybrida.A.OX2.i1 1456 CRW_00749 a.I2.m.P.littoralis.B.LSU.1787 GII Intron Unknown Gutell Lab CRW Site a.I2.m.P.littoralis.B.LSU.1787 2474 CRW_00750 a.I2.m.P.littoralis.B.LSU.2451 GII Intron Unknown Gutell Lab CRW Site a.I2.m.P.littoralis.B.LSU.2451 1192 CRW_00751 a.I2.m.P.littoralis.B.LSU.2509 GII Intron Unknown Gutell Lab CRW Site a.I2.m.P.littoralis.B.LSU.2509 990 CRW_00752 a.I2.m.P.littoralis.B.LSU.575 GII Intron Unknown Gutell Lab CRW Site a.I2.m.P.littoralis.B.LSU.575 2440 CRW_00753 a.I2.m.P.sativum.B.S10.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.m.P.sativum.B.S10.i1 990 CRW_00756 a.I2.m.S.obliquus.B.LSU.2455 GII Intron Unknown Gutell Lab CRW Site a.I2.m.S.obliquus.B.LSU.2455 625 CRW_00757 a.I2.m.Z.mays.A.OX2.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.m.Z.mays.A.OX2.i1 912 PDB_00136 CRYSTAL STRUCTURE OF A RNA MOLECULE CONTAINING DOMAIN 5 AND 6 OF THE YEAST AI5G GROUP II SELF-SPLICI GII Intron YEAST RCSB Protein Data Bank 1KXK 70 PDB_00202 SOLUTION STRUCTURE OF DOMAIN 5 FROM THE AI5(GAMMA) GROUP II INTRON GII Intron Unknown RCSB Protein Data Bank 1R2P 34

Analyse the 42 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 42 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 42 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia