RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Hammerhead Ribozyme Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 146 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00447 Hammerhead ribozyme (type III), RF00008, M83545.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 M83545.1/335-282 54 RFA_00448 Hammerhead ribozyme (type III), RF00008, M83545.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 M83545.1/3-56 54 RFA_00449 Hammerhead ribozyme (type III), RF00008, Y12833.1/339-285 Ham. Ribozyme Unknown Rfam Database RF00008 Y12833.1/285-339 55 RFA_00450 Hammerhead ribozyme (type III), RF00008, Y14700.1/133-53 Ham. Ribozyme Unknown Rfam Database RF00008 Y14700.1/53-133 81 RFA_00658 Hammerhead ribozyme (type I), RF00163, AF036389.1/120-167 Ham. Ribozyme Unknown Rfam Database RF00163 AF036389.1/167-120 48 RFA_00659 Hammerhead ribozyme (type I), RF00163, AF036390.1/118-165 Ham. Ribozyme Unknown Rfam Database RF00163 AF036390.1/165-118 48 RFA_00660 Hammerhead ribozyme (type I), RF00163, AF036391.1/121-168 Ham. Ribozyme Unknown Rfam Database RF00163 AF036391.1/168-121 48 RFA_00661 Hammerhead ribozyme (type I), RF00163, AF036392.1/121-168 Ham. Ribozyme Unknown Rfam Database RF00163 AF036392.1/168-121 48 RFA_00662 Hammerhead ribozyme (type I), RF00163, AF036393.1/119-166 Ham. Ribozyme Unknown Rfam Database RF00163 AF036393.1/166-119 48 RFA_00663 Hammerhead ribozyme (type I), RF00163, AF036394.1/118-165 Ham. Ribozyme Unknown Rfam Database RF00163 AF036394.1/165-118 48

Analyse the 146 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 146 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 146 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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