RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Hammerhead Ribozyme Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 146 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00664 Hammerhead ribozyme (type I), RF00163, AF036395.1/119-163 Ham. Ribozyme Unknown Rfam Database RF00163 AF036395.1/163-119 45 RFA_00665 Hammerhead ribozyme (type I), RF00163, AF036396.1/121-168 Ham. Ribozyme Unknown Rfam Database RF00163 AF036396.1/168-121 48 RFA_00666 Hammerhead ribozyme (type I), RF00163, AF036397.1/119-166 Ham. Ribozyme Unknown Rfam Database RF00163 AF036397.1/166-119 48 RFA_00667 Hammerhead ribozyme (type I), RF00163, AF036398.1/58-102 Ham. Ribozyme Unknown Rfam Database RF00163 AF036398.1/102-58 45 RFA_00668 Hammerhead ribozyme (type I), RF00163, AF036400.1/123-167 Ham. Ribozyme Unknown Rfam Database RF00163 AF036400.1/167-123 45 RFA_00669 Hammerhead ribozyme (type I), RF00163, AF036401.1/123-167 Ham. Ribozyme Unknown Rfam Database RF00163 AF036401.1/167-123 45 RFA_00670 Hammerhead ribozyme (type I), RF00163, AF036402.1/123-167 Ham. Ribozyme Unknown Rfam Database RF00163 AF036402.1/167-123 45 RFA_00671 Hammerhead ribozyme (type I), RF00163, AF036404.1/122-166 Ham. Ribozyme Unknown Rfam Database RF00163 AF036404.1/166-122 45 RFA_00672 Hammerhead ribozyme (type I), RF00163, AF036740.1/117-159 Ham. Ribozyme Unknown Rfam Database RF00163 AF036740.1/159-117 43 RFA_00673 Hammerhead ribozyme (type I), RF00163, AF036741.1/118-165 Ham. Ribozyme Unknown Rfam Database RF00163 AF036741.1/165-118 48

Analyse the 146 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 146 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 146 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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