RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00086 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAAU AS PART OF HAIRPIN R(GCGUUAAAUCGCA) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1HS4 13 PDB_00087 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UCAAUU AS PART OF HAIRPIN R(GCGUCAAUUCGCA) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1HS8 13 PDB_00091 THE SOLUTION STRUCTURE OF THE MUTANT STEM LOOP C 5'GUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1I46 13 PDB_00092 THE SOLUTION STRUCTURE OF THE MAJOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1I4B 13 PDB_00093 THE SOLUTION STRUCTURE OF THE MINOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1I4C 13 PDB_00098 NMR SOLUTION STRUCTURE OF AN IN VITRO SELECTED RNA WHICH IS SEQUENCE SPECIFICALLY RECOGNIZED BY HAMS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1IE1 22 PDB_00099 SOLUTION STRUCTURE OF AN IN VITRO SELECTED RNA WHICH IS SEQUENCE SPECIFICALLY RECOGNIZED BY RBD12 OF Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1IE2 22 PDB_00100 SOLUTION STRUCTURE OF AN RNA HAIRPIN FROM HRV-14 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1IK1 14 PDB_00101 CRYSTAL STRUCTURE OF A 14MER RNA CONTAINING DOUBLE UU BULGES IN TWO CRYSTAL FORMS: A NOVEL U*(AU) IN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1IK5 28 PDB_00104 CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH URIDINE BULGES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1J9H 36

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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