RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Transfer RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 707 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00106 Sprinzl tRNA RG0501 tRNA Unknown Sprinzl tRNA Database RG0501 74 SPR_00107 Sprinzl tRNA RG0502 tRNA Unknown Sprinzl tRNA Database RG0502 74 SPR_00108 Sprinzl tRNA RG0503 tRNA Unknown Sprinzl tRNA Database RG0503 74 SPR_00109 Sprinzl tRNA RG0620 tRNA Unknown Sprinzl tRNA Database RG0620 76 SPR_00110 Sprinzl tRNA RG1140 tRNA Unknown Sprinzl tRNA Database RG1140 74 SPR_00111 Sprinzl tRNA RG1180 tRNA Unknown Sprinzl tRNA Database RG1180 74 SPR_00112 Sprinzl tRNA RG1310 tRNA Unknown Sprinzl tRNA Database RG1310 74 SPR_00113 Sprinzl tRNA RG1380 tRNA Unknown Sprinzl tRNA Database RG1380 75 SPR_00114 Sprinzl tRNA RG1381 tRNA Unknown Sprinzl tRNA Database RG1381 74 SPR_00115 Sprinzl tRNA RG1540 tRNA BACILLUS SUBTILIS Sprinzl tRNA Database RG1540 74

Analyse the 707 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 707 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 707 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia