RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00195 CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QBP 84 PDB_00196 CRYSTAL STRUCTURE OF A 19 BASE PAIR COPY CONTROL RELATED RNA DUPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QC0 57 PDB_00197 NMR STRUCTURE OF TAU EXON 10 SPLICING REGULATORY ELEMENT RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QC8 25 PDB_00198 TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QES 16 PDB_00199 TANDEM GU MISMATCHES IN RNA, NMR, 30 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QET 16 PDB_00200 NMR STRUCTURE OF 5'-R(GGAUGCCUCCCGAGUGCAUCC): AN RNA HAIRPIN DERIVED FROM THE MOUSE 5'ETS THAT BINDS Other rRNA Unknown RCSB Protein Data Bank 1QWA 21 PDB_00201 NMR STRUCUTRE OF 5'-R(GGACACGAAAUCCCGAAGUAGUGUCC)-3' : AN RNA HAIRPIN CONTAINING THE IN VITRO SELECT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1QWB 26 PDB_00202 SOLUTION STRUCTURE OF DOMAIN 5 FROM THE AI5(GAMMA) GROUP II INTRON GII Intron Unknown RCSB Protein Data Bank 1R2P 34 PDB_00203 NMR STRUCTURE OF THE R(GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRE Viral & Phage Unknown RCSB Protein Data Bank 1R7W 34 PDB_00205 NMR STRUCTURE OF THE 30MER STEMLOOP-D OF COXSACKIEVIRAL RNA Viral & Phage COXSACKIEVIRUS B3 RCSB Protein Data Bank 1RFR 30

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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