RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00071 HYPERMODIFIED NUCLEOSIDES IN THE ANTICODON OF TRNALYS STABILIZE A CANONICAL U-TURN STRUCTURE tRNA Unknown RCSB Protein Data Bank 1FL8 17 PDB_00072 PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA Viral & Phage BACTERIOPHAGE PHI29 RCSB Protein Data Bank 1FOQ 545 PDB_00073 NMR VALIDATED MODEL OF DOMAIN IIID OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE IRES HEPATITIS C VIRUS RCSB Protein Data Bank 1FQZ 27 PDB_00074 CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1FUF 28 PDB_00075 EUKARYOTIC DECODING REGION A-SITE RNA Other rRNA TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1FYO 27 PDB_00076 EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX Other rRNA TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1FYP 27 PDB_00077 STRUCTURE OF RNA DUPLEXES (CIGCGICG)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1G3A 12 PDB_00078 CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING Other Ribozyme Unknown RCSB Protein Data Bank 1GID 316 PDB_00079 A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME Other Ribozyme TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1GRZ 494 PDB_00080 SOLUTION NMR STRUCTURE OF AN RNA WITH TANDEM, SYMMETRIC GU MISMATCHES, 30 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1GUC 16

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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