RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00081 P1 HELIX NUCLEIC ACIDS (DNA/RNA) RIBONUCLEIC ACID Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1HLX 20 PDB_00082 CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTR GI Intron TETRAHYMENA THEMOPHILA RCSB Protein Data Bank 1HR2 315 PDB_00083 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAACU AS PART OF HAIRPIN R(GCGUUAACUCGCA) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1HS1 13 PDB_00084 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAGU AS PART OF HAIRPIN R(GCGUUAAGUCGCA) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1HS2 13 PDB_00085 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAUU AS PART OF HAIRPIN R(GCGUUAAUUCGCA) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1HS3 13 PDB_00086 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UUAAAU AS PART OF HAIRPIN R(GCGUUAAAUCGCA) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1HS4 13 PDB_00087 SOLUTION STRUCTURE OF RNA HAIRPIN LOOP UCAAUU AS PART OF HAIRPIN R(GCGUCAAUUCGCA) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1HS8 13 PDB_00088 SOLUTION STRUCTURE OF THE VS RIBOZYME SUBSTRATE STEM-LOOP Other Ribozyme Unknown RCSB Protein Data Bank 1HWQ 30 PDB_00089 SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA 23S rRNA Unknown RCSB Protein Data Bank 1I3X 19 PDB_00090 SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA. 23S rRNA Unknown RCSB Protein Data Bank 1I3Y 19

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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