RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Gutell Lab CRW Site , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1056 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00107 d.16.b.D.thermophilus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.D.thermophilus 1559 CRW_00108 d.16.b.E.brachy 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.brachy 1520 CRW_00109 d.16.b.E.coli.0157G.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.coli.0157G.GEN 1542 CRW_00110 d.16.b.E.coli 16S rRNA Escherichia coli Gutell Lab CRW Site d.16.b.E.coli 1542 CRW_00111 d.16.b.E.coli.EDL.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.coli.EDL.GEN 1542 CRW_00112 d.16.b.E.coli.K12.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.coli.K12.GEN 1542 CRW_00113 d.16.b.E.faecalis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.faecalis 1561 CRW_00114 d.16.b.E.faecium2 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.faecium2 1538 CRW_00115 d.16.b.E.rhusiopathiae 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.rhusiopathiae 1539 CRW_00116 d.16.b.E.tarda 16S rRNA Unknown Gutell Lab CRW Site d.16.b.E.tarda 1542

Analyse the 1056 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1056 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1056 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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