RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Nucleic Acid Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 53 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] NDB_00025 STRUCTURE OF 5'-D(*(BRO)CP*GP*(BRO)CP*G)-3' IN COMPLEX WITH PROFLAVINE Synthetic RNA SYNTHETIC Nucleic Acid Database dddb06 8 NDB_00026 NDB id ddf007 Unknown Unknown Nucleic Acid Database ddf007 12 NDB_00027 NDB id ddf031 Unknown Unknown Nucleic Acid Database ddf031 12 NDB_00028 NDB id ddf032 Unknown Unknown Nucleic Acid Database ddf032 12 NDB_00032 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. VIII. STRUCTURES OF TWO ETHIDI Synthetic RNA SYNTHETIC Nucleic Acid Database drb006 4 NDB_00033 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. VIII. STRUCTURES OF TWO ETHIDI Unknown Unknown Nucleic Acid Database drb007 4 NDB_00034 NDB id drb008 Unknown Unknown Nucleic Acid Database drb008 4 NDB_00035 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION. VII. STRUCTURE OF AN ETHIDIUM Synthetic RNA SYNTHETIC Nucleic Acid Database drb018 4 NDB_00036 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: V. STRUCTURE OF TWO AMINOACRID Synthetic RNA SYNTHETIC Nucleic Acid Database drbb01 4 NDB_00037 VISUALIZATION OF DRUG-NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: IV. STRUCTURE OF AN AMINOACRID Synthetic RNA SYNTHETIC Nucleic Acid Database drbb09 8

Analyse the 53 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 53 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 53 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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