RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00102 ACCEPTOR STEM, NMR, 30 STRUCTURES tRNA Unknown RCSB Protein Data Bank 1IKD 22 PDB_00103 SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP FROM E. COLI TRNA(PHE) tRNA E. COLI RCSB Protein Data Bank 1J4Y 17 PDB_00104 CRYSTAL STRUCTURE OF AN RNA DUPLEX WITH URIDINE BULGES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1J9H 36 PDB_00107 SOLUTION STRUCTURE OF INFLUENZA A VIRUS PROMOTER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JO7 31 PDB_00108 NMR STRUCTURE OF THE LP5.1 HAIRPIN FROM BACILLUS RNASE P RNA REFINED WITH RESIDUAL DIPOLAR COUPLINGS RNase P RNA Unknown RCSB Protein Data Bank 1JOX 21 PDB_00109 NMR STRUCTURE OF THE LP5.1 HAIRPIN FROM BACILLUS RNASE P RNA REFINED WITHOUT RESIDUAL DIPOLAR COUPLI RNase P RNA Unknown RCSB Protein Data Bank 1JP0 21 PDB_00110 SOLUTION STRUCTURE OF HIV-1LAI MUTATED SL1 HAIRPIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JTJ 23 PDB_00111 STRUCTURE OF SL4 RNA FROM THE HIV-1 PACKAGING SIGNAL Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JTW 16 PDB_00112 DIMER INITIATION SEQUENCE OF HIV-1LAI GENOMIC RNA: NMR SOLUTION STRUCTURE OF THE EXTENDED DUPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JU1 46 PDB_00113 SOLUTION STRUCTURE OF HELIX III IN XENOPUS OOCYTE 5S RRNA. Other RNA Unknown RCSB Protein Data Bank 1JUR 22

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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