RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RCSB Protein Data Bank , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1059 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00124 CONFORMATION OF AN RNA PSEUDOKNOT FROM MOUSE MAMMARY TUMOR VIRUS, NMR, 1 STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KAJ 32 PDB_00125 THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2, THALLIUM FORM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KD3 22 PDB_00126 THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2, BARIUM FORM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KD4 22 PDB_00127 THE CRYSTAL STRUCTURE OF R(GGUCACAGCCC)2 METAL FREE FORM Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KD5 22 PDB_00128 TAR-TAR "KISSING" HAIRPIN COMPLEX DERIVED FROM THE HIV GENOME, NMR, 1 STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KIS 32 PDB_00129 SOLUTION STRUCTURE OF THE UNMODIFIED ANTICODON STEM-LOOP FROM E. COLI TRNA(PHE) tRNA E. COLI RCSB Protein Data Bank 1KKA 17 PDB_00130 STRUCTURE OF THE HISTONE MRNA HAIRPIN REQUIRED FOR CELL CYCLE REGULATION OF HISTONE GENE EXPRESSION Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KKS 24 PDB_00131 SOLUTION NMR STRUCTURE OF AN ANALOG OF THE YEAST TRNA PHE T STEM LOOP CONTAINING RIBOTHYMIDINE AT IT tRNA YEAST RCSB Protein Data Bank 1KOS 17 PDB_00132 CONSERVED RNA STRUCTURE WITHIN THE HCV IRES EIF3 BINDING SITE IRES Unknown RCSB Protein Data Bank 1KP7 30 PDB_00133 A MUTANT RNA PSEUDOKNOT THAT PROMOTES RIBOSOMAL FRAMESHIFTING IN MOUSE MAMMARY TUMOR VIRUS, NMR, MIN Other rRNA Unknown RCSB Protein Data Bank 1KPD 32

Analyse the 1059 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1059 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1059 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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