RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Rfam Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 313 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00629 RNase E 5 prime UTR element, RF00040, AJ414149.1/78777-78440 RNase E 5 UTR Unknown Rfam Database RF00040 AJ414149.1/78440-78777 338 RFA_00630 RNase E 5 prime UTR element, RF00040, AL627269.1/129907-129570 RNase E 5 UTR Unknown Rfam Database RF00040 AL627269.1/129570-129907 338 RFA_00631 RNase E 5 prime UTR element, RF00040, D90744.1/11682-11346 RNase E 5 UTR Unknown Rfam Database RF00040 D90744.1/11346-11682 337 RFA_00632 Hepatitis delta virus ribozyme, RF00094, AB037947.1/685-775 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 AB037947.1/775-685 91 RFA_00633 Hepatitis delta virus ribozyme, RF00094, AB037948.1/685-775 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 AB037948.1/775-685 91 RFA_00634 Hepatitis delta virus ribozyme, RF00094, L22063.1/691-781 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 L22063.1/781-691 91 RFA_00635 Hepatitis delta virus ribozyme, RF00094, M28267.1/687-775 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 M28267.1/775-687 89 RFA_00636 Hepatitis delta virus ribozyme, RF00094, M84917.1/684-773 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 M84917.1/773-684 90 RFA_00637 Hepatitis delta virus ribozyme, RF00094, M92448.1/681-769 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 M92448.1/769-681 89 RFA_00638 Hepatitis delta virus ribozyme, RF00094, U81988.1/679-767 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 U81988.1/767-679 89

Analyse the 313 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 313 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 313 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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