RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Rfam Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 313 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00699 Hammerhead ribozyme (type I), RF00163, AF404062.1/178-64 Ham. Ribozyme Unknown Rfam Database RF00163 AF404062.1/64-178 115 RFA_00700 Hammerhead ribozyme (type I), RF00163, AF404063.1/176-63 Ham. Ribozyme Unknown Rfam Database RF00163 AF404063.1/63-176 114 RFA_00701 Hammerhead ribozyme (type I), RF00163, AF404067.1/70-184 Ham. Ribozyme Unknown Rfam Database RF00163 AF404067.1/184-70 115 RFA_00702 Hammerhead ribozyme (type I), RF00163, AF404068.1/70-185 Ham. Ribozyme Unknown Rfam Database RF00163 AF404068.1/185-70 116 RFA_00703 Hammerhead ribozyme (type I), RF00163, AF404073.1/70-162 Ham. Ribozyme Unknown Rfam Database RF00163 AF404073.1/162-70 93 RFA_00704 Hammerhead ribozyme (type I), RF00163, AY028787.1/23621-23665 Ham. Ribozyme Unknown Rfam Database RF00163 AY028787.1/23665-23621 45 RFA_00705 Hammerhead ribozyme (type I), RF00163, D87492.1/1479-1524 Ham. Ribozyme Unknown Rfam Database RF00163 D87492.1/1524-1479 46 RFA_00706 Hammerhead ribozyme (type I), RF00163, D87492.1/2147-2192 Ham. Ribozyme Unknown Rfam Database RF00163 D87492.1/2192-2147 46 RFA_00707 Hammerhead ribozyme (type I), RF00163, D87492.1/743-788 Ham. Ribozyme Unknown Rfam Database RF00163 D87492.1/788-743 46 RFA_00708 Hammerhead ribozyme (type I), RF00163, D87493.1/3564-3609 Ham. Ribozyme Unknown Rfam Database RF00163 D87493.1/3609-3564 46

Analyse the 313 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 313 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 313 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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