RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Rfam Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 313 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00438 Hammerhead ribozyme (type III), RF00008, AJ550908.1/281-334 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550908.1/334-281 54 RFA_00439 Hammerhead ribozyme (type III), RF00008, AJ550909.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550909.1/3-56 54 RFA_00440 Hammerhead ribozyme (type III), RF00008, AJ550910.1/282-336 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550910.1/336-282 55 RFA_00441 Hammerhead ribozyme (type III), RF00008, AJ550911.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550911.1/335-282 54 RFA_00442 Hammerhead ribozyme (type III), RF00008, AJ550911.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550911.1/3-56 54 RFA_00443 Hammerhead ribozyme (type III), RF00008, AJ550912.1/56-3 Ham. Ribozyme Unknown Rfam Database RF00008 AJ550912.1/3-56 54 RFA_00444 Hammerhead ribozyme (type III), RF00008, M33000.1/55-110 Ham. Ribozyme Unknown Rfam Database RF00008 M33000.1/110-55 56 RFA_00445 Hammerhead ribozyme (type III), RF00008, M33001.1/56-111 Ham. Ribozyme Unknown Rfam Database RF00008 M33001.1/111-56 56 RFA_00446 Hammerhead ribozyme (type III), RF00008, M63666.1/246-192 Ham. Ribozyme Unknown Rfam Database RF00008 M63666.1/192-246 55 RFA_00447 Hammerhead ribozyme (type III), RF00008, M83545.1/282-335 Ham. Ribozyme Unknown Rfam Database RF00008 M83545.1/335-282 54

Analyse the 313 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 313 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 313 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia