RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Sprinzl tRNA Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 622 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SPR_00222 Sprinzl tRNA RL1700 tRNA Unknown Sprinzl tRNA Database RL1700 87 SPR_00223 Sprinzl tRNA RL2020 tRNA Unknown Sprinzl tRNA Database RL2020 85 SPR_00224 Sprinzl tRNA RL2100 tRNA Unknown Sprinzl tRNA Database RL2100 87 SPR_00225 Sprinzl tRNA RL2101 tRNA Unknown Sprinzl tRNA Database RL2101 87 SPR_00226 Sprinzl tRNA RL2120 tRNA Unknown Sprinzl tRNA Database RL2120 86 SPR_00227 Sprinzl tRNA RL2840 tRNA Unknown Sprinzl tRNA Database RL2840 84 SPR_00228 Sprinzl tRNA RL2841 tRNA Unknown Sprinzl tRNA Database RL2841 88 SPR_00229 Sprinzl tRNA RL2842 tRNA Unknown Sprinzl tRNA Database RL2842 83 SPR_00230 Sprinzl tRNA RL3160 tRNA Unknown Sprinzl tRNA Database RL3160 85 SPR_00231 Sprinzl tRNA RL3161 tRNA Unknown Sprinzl tRNA Database RL3161 88

Analyse the 622 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 622 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 622 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia