RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00021 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00021 Molecule name [?]: RNase P RNA, Anabaena sp., strain PCC 7120 Source [?]: RNase P Database Source ID [?]: Anabaena sp., strain PCC 7120 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 457 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 137 Number of paired bases [?]: 320

Click on any header below for additional features.

Stem features Number of stems [?]: 22 Number of base pairs in stems [?]: 122 Maximum length of a stem [?]: 30 Average length of a stem [?]: 5.55 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -8.3 Minimum estimated free energy [?]: -40.8

Hairpin loop features Number of hairpin loops [?]: 8 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 4.25 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 12 Maximum number of free bases in bulge loops [?]: 3 Average number of free bases in bulge loops [?]: 0.71 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 11 Average number of free bases in multi-loops: 2.38 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 11 Average multi-loop absolute asymmetry: 3.25 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 11 Average multi-loop relative asymmetry: 1.13 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 10 Total number of AA non-canonical base pairs: 1 Total number of AC non-canonical base pairs: 5 Total number of AG non-canonical base pairs: 2 Total number of CU non-canonical base pairs: 2

Pseudoknot features Number of pseudoknots [?]: 2 Number of bands: 5 Number of base pairs in bands: 38 Maximum band length: 11 Average band length: 7.6 Minimum band length: 5 Maximum number of bands per pseudoknot: 3 Average number of bands per pseudoknot: 2.5 Minimum number of bands per pseudoknot: 2 Maximum number of un-bands: 4 Average number of un-bands: 2.5 Minimum number of un-bands: 1 Maximum number of in-bands: 0 Average number of in-bands: 0 Minimum number of in-bands: 0 Maximum number of unpaired bases: 29 Average number of unpaired bases: 27 Minimum number of unpaired bases: 25 Several ways to remove minimum number of base pairs, per molecule: No Minimum number of base pairs to remove, per molecule: 14 Maximum number of base pairs to remove, per pseudoknot: 7 Average number of base pairs to remove, per pseudoknot: 7 Minimum number of base pairs to remove, per pseudoknot: 7 Minimum number of bands to remove, per molecule: 2 Maximum number of bands to remove, per pseudoknot: 1 Average number of bands to remove, per pseudoknot: 1 Minimum number of bands to remove, per pseudoknot: 1

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia