RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00029
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00029
Molecule name [?]:RNase P RNA, Bacillus megaterium, strain KM
Source [?]:RNase P Database
Source ID [?]:Bacillus megaterium, strain KM
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:408
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:164
Number of paired bases [?]:244

Click on any header below for additional features.

Stem features

Number of stems [?]:22
Number of base pairs in stems [?]:107
Maximum length of a stem [?]:10
Average length of a stem [?]:4.86
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-7.7
Minimum estimated free energy [?]:-17.3

Hairpin loop features

Number of hairpin loops [?]:10
Maximum number of free bases in hairpin loops [?]:16
Average number of free bases in hairpin loops [?]:6.6
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:6
Maximum number of free bases in bulge loops [?]:5
Average number of free bases in bulge loops [?]:0.92
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:3
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:6.5
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:3
Average internal loop absolute asymmetry:1.67
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:3
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:1.1
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:5
Average multi-loop absolute asymmetry:2.22
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:5
Average multi-loop relative asymmetry:0.43
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:3.33
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 5
Total number of AA non-canonical base pairs:2
Total number of AG non-canonical base pairs:2
Total number of UU non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:2
Number of base pairs in bands:15
Maximum band length:8
Average band length:7.5
Minimum band length:7
Maximum number of bands per pseudoknot:2
Average number of bands per pseudoknot:2
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:6
Average number of un-bands:6
Minimum number of un-bands:6
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:28
Average number of unpaired bases:28
Minimum number of unpaired bases:28
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:7
Maximum number of base pairs to remove, per pseudoknot:7
Average number of base pairs to remove, per pseudoknot:7
Minimum number of base pairs to remove, per pseudoknot:7
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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