RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00079
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00079
Molecule name [?]:RNase P RNA, Compost Heap A56
Source [?]:RNase P Database
Source ID [?]:Compost Heap A56
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:334
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:134
Number of paired bases [?]:200

Click on any header below for additional features.

Stem features

Number of stems [?]:20
Number of base pairs in stems [?]:76
Maximum length of a stem [?]:8
Average length of a stem [?]:3.8
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-5.55
Minimum estimated free energy [?]:-14.2

Hairpin loop features

Number of hairpin loops [?]:9
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:4.56
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:8
Maximum number of free bases in bulge loops [?]:3
Average number of free bases in bulge loops [?]:0.75
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features
Number of multi-loops [?]:3
Maximum number of free bases in multi-loops:17
Average number of free bases in multi-loops:4.17
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:17
Average multi-loop absolute asymmetry:5.11
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:6
Average multi-loop relative asymmetry:0.76
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 5
Total number of AA non-canonical base pairs:2
Total number of AG non-canonical base pairs:1
Total number of CU non-canonical base pairs:1
Total number of GG non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:3
Number of base pairs in bands:24
Maximum band length:16
Average band length:8
Minimum band length:4
Maximum number of bands per pseudoknot:3
Average number of bands per pseudoknot:3
Minimum number of bands per pseudoknot:3
Maximum number of un-bands:1
Average number of un-bands:1
Minimum number of un-bands:1
Maximum number of in-bands:2
Average number of in-bands:2
Minimum number of in-bands:2
Maximum number of unpaired bases:24
Average number of unpaired bases:24
Minimum number of unpaired bases:24
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:4
Maximum number of base pairs to remove, per pseudoknot:4
Average number of base pairs to remove, per pseudoknot:4
Minimum number of base pairs to remove, per pseudoknot:4
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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