RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00159
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00159
Molecule name [?]:RNase P RNA, Kluyveromyces polysporus, strain NRRL Y-8283
Source [?]:RNase P Database
Source ID [?]:Kluyveromyces polysporus, strain NRRL Y-8283
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:265
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:3
Number of unpaired bases [?]:143
Number of paired bases [?]:122

Click on any header below for additional features.

Stem features

Number of stems [?]:9
Number of base pairs in stems [?]:61
Maximum length of a stem [?]:12
Average length of a stem [?]:6.78
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-8.77
Minimum estimated free energy [?]:-14.2

Hairpin loop features

Number of hairpin loops [?]:5
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:4.6
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:16
Average number of free bases in internal loops:15.5
Minimum number of free bases in internal loop:15
Maximum internal loop absolute asymmetry:1
Average internal loop absolute asymmetry:1
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:18
Average number of free bases in multi-loops:7
Minimum number of free bases in multi-loop:2
Maximum multi-loop absolute asymmetry:16
Average multi-loop absolute asymmetry:8.67
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:9
Average multi-loop relative asymmetry:2.52
Minimum multi-loop relative asymmetry:0.11
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 7
Total number of AA non-canonical base pairs:2
Total number of AC non-canonical base pairs:1
Total number of CC non-canonical base pairs:1
Total number of CU non-canonical base pairs:3

Pseudoknot features



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