RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00191
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00191
Molecule name [?]:RNase P RNA, Methanothermus fervidus, strain V245
Source [?]:RNase P Database
Source ID [?]:Methanothermus fervidus, strain V245
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:244
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:122
Number of paired bases [?]:122

Click on any header below for additional features.

Stem features

Number of stems [?]:14
Number of base pairs in stems [?]:61
Maximum length of a stem [?]:10
Average length of a stem [?]:4.36
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-8.42
Minimum estimated free energy [?]:-20.6

Hairpin loop features

Number of hairpin loops [?]:4
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:5.25
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:4
Maximum number of free bases in bulge loops [?]:8
Average number of free bases in bulge loops [?]:1.62
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:4
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:6.5
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:5
Average internal loop absolute asymmetry:3
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:3
Average internal loop relative asymmetry:1.5
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:27
Average number of free bases in multi-loops:4.29
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:27
Average multi-loop absolute asymmetry:9
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:9
Average multi-loop relative asymmetry:1.14
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:3.5
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of GG non-canonical base pairs:1

Pseudoknot features



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