RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00195
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00195
Molecule name [?]:RNase P RNA, Mycoplasma hyopneumoniae, strain J
Source [?]:RNase P Database
Source ID [?]:Mycoplasma hyopneumoniae, strain J
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:416
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:2
Number of unpaired bases [?]:150
Number of paired bases [?]:266

Click on any header below for additional features.

Stem features

Number of stems [?]:23
Number of base pairs in stems [?]:118
Maximum length of a stem [?]:14
Average length of a stem [?]:5.13
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-6.27
Minimum estimated free energy [?]:-14.1

Hairpin loop features

Number of hairpin loops [?]:9
Maximum number of free bases in hairpin loops [?]:16
Average number of free bases in hairpin loops [?]:7.89
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:11
Maximum number of free bases in bulge loops [?]:7
Average number of free bases in bulge loops [?]:1.09
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:11
Average number of free bases in internal loops:10
Minimum number of free bases in internal loop:9
Maximum internal loop absolute asymmetry:2
Average internal loop absolute asymmetry:2
Minimum internal loop absolute asymmetry:2
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:5
Average number of free bases in multi-loops:0.71
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:5
Average multi-loop absolute asymmetry:1.66
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:0
Average multi-loop relative asymmetry:0
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:3.5
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 4
Total number of AA non-canonical base pairs:1
Total number of GG non-canonical base pairs:1
Total number of UU non-canonical base pairs:2

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:2
Number of base pairs in bands:15
Maximum band length:8
Average band length:7.5
Minimum band length:7
Maximum number of bands per pseudoknot:2
Average number of bands per pseudoknot:2
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:5
Average number of un-bands:5
Minimum number of un-bands:5
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:30
Average number of unpaired bases:30
Minimum number of unpaired bases:30
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:7
Maximum number of base pairs to remove, per pseudoknot:7
Average number of base pairs to remove, per pseudoknot:7
Minimum number of base pairs to remove, per pseudoknot:7
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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