RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00196 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00196 Molecule name [?]: RNase P RNA, Methanococcus jannaschii, strain JAL-1 Source [?]: RNase P Database Source ID [?]: Methanococcus jannaschii, strain JAL-1 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: Methanococcus jannaschii Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 252 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 102 Number of paired bases [?]: 150

Click on any header below for additional features.

Stem features Number of stems [?]: 11 Number of base pairs in stems [?]: 61 Maximum length of a stem [?]: 10 Average length of a stem [?]: 5.55 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 1.3 Average estimated free energy [?]: -11.47 Minimum estimated free energy [?]: -20.1

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 3.75 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 4 Maximum number of free bases in bulge loops [?]: 6 Average number of free bases in bulge loops [?]: 1.38 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 14 Average number of free bases in internal loops: 10 Minimum number of free bases in internal loop: 6 Maximum internal loop absolute asymmetry: 8 Average internal loop absolute asymmetry: 6 Minimum internal loop absolute asymmetry: 4 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 1.5 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 1 Average number of free bases in multi-loops: 0.33 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 1 Average multi-loop absolute asymmetry: 0.67 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 0 Average multi-loop relative asymmetry: 0 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AA non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features Number of pseudoknots [?]: 1 Number of bands: 2 Number of base pairs in bands: 14 Maximum band length: 8 Average band length: 7 Minimum band length: 6 Maximum number of bands per pseudoknot: 2 Average number of bands per pseudoknot: 2 Minimum number of bands per pseudoknot: 2 Maximum number of un-bands: 3 Average number of un-bands: 3 Minimum number of un-bands: 3 Maximum number of in-bands: 0 Average number of in-bands: 0 Minimum number of in-bands: 0 Maximum number of unpaired bases: 35 Average number of unpaired bases: 35 Minimum number of unpaired bases: 35 Several ways to remove minimum number of base pairs, per molecule: No Minimum number of base pairs to remove, per molecule: 6 Maximum number of base pairs to remove, per pseudoknot: 6 Average number of base pairs to remove, per pseudoknot: 6 Minimum number of base pairs to remove, per pseudoknot: 6 Minimum number of bands to remove, per molecule: 1 Maximum number of bands to remove, per pseudoknot: 1 Average number of bands to remove, per pseudoknot: 1 Minimum number of bands to remove, per pseudoknot: 1

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