RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

    [ Home | Search | Analyse | Submit structures | News | Help ]



General features for molecule ASE_00210
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00210
Molecule name [?]:RNase P RNA, Methanococcus thermolithotrophicus, strain SN-1
Source [?]:RNase P Database
Source ID [?]:Methanococcus thermolithotrophicus, strain SN-1
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:234
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:104
Number of paired bases [?]:130

Click on any header below for additional features.

Stem features

Number of stems [?]:10
Number of base pairs in stems [?]:51
Maximum length of a stem [?]:9
Average length of a stem [?]:5.1
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-1.1
Average estimated free energy [?]:-8.89
Minimum estimated free energy [?]:-19.8

Hairpin loop features

Number of hairpin loops [?]:4
Maximum number of free bases in hairpin loops [?]:6
Average number of free bases in hairpin loops [?]:4.75
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:3
Maximum number of free bases in bulge loops [?]:3
Average number of free bases in bulge loops [?]:1.17
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:2
Maximum number of free bases in internal loops:13
Average number of free bases in internal loops:9.75
Minimum number of free bases in internal loop:6
Maximum internal loop absolute asymmetry:7
Average internal loop absolute asymmetry:5.5
Minimum internal loop absolute asymmetry:4
Maximum internal loop relative asymmetry:2
Average internal loop relative asymmetry:1.5
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:4
Average number of free bases in multi-loops:1.33
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:4
Average multi-loop absolute asymmetry:2.67
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:0
Average multi-loop relative asymmetry:0
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:3
Average number of branches in multi-loops:3
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AA non-canonical base pairs:1
Total number of AC non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:2
Number of base pairs in bands:14
Maximum band length:8
Average band length:7
Minimum band length:6
Maximum number of bands per pseudoknot:2
Average number of bands per pseudoknot:2
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:3
Average number of un-bands:3
Minimum number of un-bands:3
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:35
Average number of unpaired bases:35
Minimum number of unpaired bases:35
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:6
Maximum number of base pairs to remove, per pseudoknot:6
Average number of base pairs to remove, per pseudoknot:6
Minimum number of base pairs to remove, per pseudoknot:6
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



    [ Home | Search | Analyse | Submit structures | News | Help ]

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia