RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00301
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00301
Molecule name [?]:RNase P RNA, Staphylococcus aureus, strain aureus
Source [?]:RNase P Database
Source ID [?]:Staphylococcus aureus, strain aureus
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:Staphylococcus aureus
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:349
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:161
Number of paired bases [?]:188

Click on any header below for additional features.

Stem features

Number of stems [?]:21
Number of base pairs in stems [?]:94
Maximum length of a stem [?]:9
Average length of a stem [?]:4.48
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-5.64
Minimum estimated free energy [?]:-11.1

Hairpin loop features

Number of hairpin loops [?]:9
Maximum number of free bases in hairpin loops [?]:17
Average number of free bases in hairpin loops [?]:7.44
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:5
Maximum number of free bases in bulge loops [?]:5
Average number of free bases in bulge loops [?]:1
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:3
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:6.17
Minimum number of free bases in internal loop:2
Maximum internal loop absolute asymmetry:3
Average internal loop absolute asymmetry:1.67
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:4
Maximum number of free bases in multi-loops:16
Average number of free bases in multi-loops:2.5
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:16
Average multi-loop absolute asymmetry:3.35
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:5.33
Average multi-loop relative asymmetry:0.59
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:6
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 8
Total number of AG non-canonical base pairs:4
Total number of CU non-canonical base pairs:1
Total number of GG non-canonical base pairs:1
Total number of UU non-canonical base pairs:2

Pseudoknot features



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