RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00322 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00322 Molecule name [?]: RNase P RNA, Saccharomycopsis fibuligera, strain NRRL Y-2388 Source [?]: RNase P Database Source ID [?]: Saccharomycopsis fibuligera, strain NRRL Y-2388 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 243 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 147 Number of paired bases [?]: 96

Click on any header below for additional features.

Stem features Number of stems [?]: 7 Number of base pairs in stems [?]: 48 Maximum length of a stem [?]: 13 Average length of a stem [?]: 6.86 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.1 Average estimated free energy [?]: -13.44 Minimum estimated free energy [?]: -27.1

Hairpin loop features Number of hairpin loops [?]: 5 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 29 Average number of free bases in internal loops: 18.5 Minimum number of free bases in internal loop: 8 Maximum internal loop absolute asymmetry: 21 Average internal loop absolute asymmetry: 21 Minimum internal loop absolute asymmetry: 21 Maximum internal loop relative asymmetry: 3 Average internal loop relative asymmetry: 3 Minimum internal loop relative asymmetry: 3

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 46 Average number of free bases in multi-loops: 13.75 Minimum number of free bases in multi-loop: 1 Maximum multi-loop absolute asymmetry: 45 Average multi-loop absolute asymmetry: 22.83 Minimum multi-loop absolute asymmetry: 2 Maximum multi-loop relative asymmetry: 46 Average multi-loop relative asymmetry: 6.79 Minimum multi-loop relative asymmetry: 0.02 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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