RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00344
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00344
Molecule name [?]:RNase P RNA, Saccharomyces servazzii, strain NRRL Y-12661
Source [?]:RNase P Database
Source ID [?]:Saccharomyces servazzii, strain NRRL Y-12661
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:234
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:3
Number of unpaired bases [?]:122
Number of paired bases [?]:112

Click on any header below for additional features.

Stem features

Number of stems [?]:9
Number of base pairs in stems [?]:56
Maximum length of a stem [?]:12
Average length of a stem [?]:6.22
Minimum length of a stem [?]:3
Maximum estimated free energy [?]:-4.6
Average estimated free energy [?]:-9.02
Minimum estimated free energy [?]:-15.9

Hairpin loop features

Number of hairpin loops [?]:5
Maximum number of free bases in hairpin loops [?]:4
Average number of free bases in hairpin loops [?]:4
Minimum number of free bases in hairpin loop [?]:4
Total number of UUCG hairpin motifs per molecule [?]:1

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:16
Average number of free bases in internal loops:14
Minimum number of free bases in internal loop:12
Maximum internal loop absolute asymmetry:4
Average internal loop absolute asymmetry:4
Minimum internal loop absolute asymmetry:4
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:1
Maximum number of free bases in multi-loops:32
Average number of free bases in multi-loops:9.25
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:32
Average multi-loop absolute asymmetry:16.17
Minimum multi-loop absolute asymmetry:1
Maximum multi-loop relative asymmetry:16
Average multi-loop relative asymmetry:3.22
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:4

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 3
Total number of AC non-canonical base pairs:1
Total number of AG non-canonical base pairs:1
Total number of UU non-canonical base pairs:1

Pseudoknot features



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