RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule CRW_00735 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: CRW_00735 Molecule name [?]: a.I2.c.N.tabacum.B.ND1.i1 Source [?]: Gutell Lab CRW Site Source ID [?]: a.I2.c.N.tabacum.B.ND1.i1 Reference [?]: http://www.rna.ccbb.utexas.edu; Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., Pande N., Shang Z., Yu N., and Gutell R.R. (2002). The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron, and other RNAs. BioMed Central Bioinformatics, 3:2. [Correction: BioMed Central Bioinformatics. 3:15.] Type [?]: Group II Intron [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 1165 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 6 Number of unpaired bases [?]: 923 Number of paired bases [?]: 242

Click on any header below for additional features.

Stem features Number of stems [?]: 27 Number of base pairs in stems [?]: 121 Maximum length of a stem [?]: 10 Average length of a stem [?]: 4.48 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -6.43 Minimum estimated free energy [?]: -18.2

Hairpin loop features Number of hairpin loops [?]: 10 Maximum number of free bases in hairpin loops [?]: 331 Average number of free bases in hairpin loops [?]: 50.8 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 6 Maximum number of free bases in bulge loops [?]: 56 Average number of free bases in bulge loops [?]: 6 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 9 Maximum number of free bases in internal loops: 112 Average number of free bases in internal loops: 9 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 109 Average internal loop absolute asymmetry: 12.89 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 37 Average internal loop relative asymmetry: 5.11 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 80 Average number of free bases in multi-loops: 16.38 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 80 Average multi-loop absolute asymmetry: 19.2 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 8 Average multi-loop relative asymmetry: 1.11 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 5 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features

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