RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule CRW_00738
(click to expand/contract all tables)

Format:
Molecule ID [?]:CRW_00738
Molecule name [?]:a.I2.c.N.tabacum.B.pD.i1
Source [?]:Gutell Lab CRW Site
Source ID [?]:a.I2.c.N.tabacum.B.pD.i1
Reference [?]:http://www.rna.ccbb.utexas.edu; Cannone J.J., Subramanian S., Schnare M.N., Collett J.R., D Souza L.M., Du Y., Feng B., Lin N., Madabusi L.V., Muller K.M., Pande N., Shang Z., Yu N., and Gutell R.R. (2002). The Comparative RNA Web (CRW) Site: An Online Database of Comparative Sequence and Structure Information for Ribosomal, Intron, and other RNAs. BioMed Central Bioinformatics, 3:2. [Correction: BioMed Central Bioinformatics. 3:15.]
Type [?]:Group II Intron

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:759
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:6
Number of unpaired bases [?]:485
Number of paired bases [?]:274

Click on any header below for additional features.

Stem features

Number of stems [?]:26
Number of base pairs in stems [?]:137
Maximum length of a stem [?]:26
Average length of a stem [?]:5.27
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-7.69
Minimum estimated free energy [?]:-41.8

Hairpin loop features

Number of hairpin loops [?]:10
Maximum number of free bases in hairpin loops [?]:180
Average number of free bases in hairpin loops [?]:27.3
Minimum number of free bases in hairpin loop [?]:3

Bulge loop features
Number of bulge loops [?]:4
Maximum number of free bases in bulge loops [?]:4
Average number of free bases in bulge loops [?]:1.12
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:10
Maximum number of free bases in internal loops:29
Average number of free bases in internal loops:5.6
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:19
Average internal loop absolute asymmetry:4.4
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:3
Average internal loop relative asymmetry:1.6
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:16
Average number of free bases in multi-loops:5.5
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:16
Average multi-loop absolute asymmetry:7.34
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:5.33
Average multi-loop relative asymmetry:0.72
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:5
Average number of branches in multi-loops:4
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 1
Total number of UU non-canonical base pairs:1

Pseudoknot features



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