RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00011
(click to expand/contract all tables)

Format:

Molecule ID [?]:	NDB_00011
Molecule name [?]:	NDB id arb004
Source [?]:	Nucleic Acid Database
Source ID [?]:	arb004
Reference [?]:	J.M.Rosenberg, N.C.Seeman, R.O.Day, A.Rich. RNA Double-Helical Fragments at Atomic Resolution: II. The Crystal Structure of Sodium Guanylyl -3',5'-Cytidine Nonhydrate. J.Mol.Biol. V. 104 145 1976 ASTM JMOBAK UK ISSN 0022-2836 0070
Type [?]:	Unknown	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-Ray; ran through RNAview
Number of molecules [?]:	2
Length [?]:	4
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: NDB_00012
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	4

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	2
Maximum length of a stem [?]:	2
Average length of a stem [?]:	2
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	-3.4
Average estimated free energy [?]:	-3.4
Minimum estimated free energy [?]:	-3.4

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features