RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00015
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00015
Molecule name [?]:UNUSUAL HELICAL PACKING IN CRYSTALS OF DNA BEARING A MUTATION HOT SPOT
Source [?]:Nucleic Acid Database
Source ID [?]:bdl018
Reference [?]:Y.TIMSIT,E.WESTHOF,R.P.P.FUCHS,D.MORAS. UNUSUAL HELICAL PACKING IN CRYSTALS OF DNA BEARING A MUTATION HOT SPOT. NATURE V. 341 459 1989 ASTM NATUAS UK ISSN 0028-0836
Type [?]:Unknown

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:24
Fragments used [?]:No
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:4
Number of paired bases [?]:20

Click on any header below for additional features.

Stem features

Number of stems [?]:3
Number of base pairs in stems [?]:10
Maximum length of a stem [?]:4
Average length of a stem [?]:3.33
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-3.03
Minimum estimated free energy [?]:-9.1

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:1
Average number of free bases in hairpin loops [?]:1
Minimum number of free bases in hairpin loop [?]:1

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:1
Average number of free bases in bulge loops [?]:0.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AG non-canonical base pairs:2

Pseudoknot features



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