RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule NDB_00015
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
NDB_00015
Molecule name [
?
]:
UNUSUAL HELICAL PACKING IN CRYSTALS OF DNA BEARING A MUTATION HOT SPOT
Source [
?
]:
Nucleic Acid Database
Source ID [
?
]:
bdl018
Reference [
?
]:
Y.TIMSIT,E.WESTHOF,R.P.P.FUCHS,D.MORAS. UNUSUAL HELICAL PACKING IN CRYSTALS OF DNA BEARING A MUTATION HOT SPOT. NATURE V. 341 459 1989 ASTM NATUAS UK ISSN 0028-0836
Type [
?
]:
Unknown
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
N/A
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
2
Length [
?
]:
24
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
4
Number of paired bases [
?
]:
20
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
3
Number of base pairs in stems [
?
]:
10
Maximum length of a stem [
?
]:
4
Average length of a stem [
?
]:
3.33
Minimum length of a stem [
?
]:
2
Maximum estimated free energy [
?
]:
0
Average estimated free energy [
?
]:
-3.03
Minimum estimated free energy [
?
]:
-9.1
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
1
Average number of free bases in hairpin loops [
?
]:
1
Minimum number of free bases in hairpin loop [
?
]:
1
Bulge loop features
Number of bulge loops [
?
]:
2
Maximum number of free bases in bulge loops [
?
]:
1
Average number of free bases in bulge loops [
?
]:
0.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
2
Total number of AG non-canonical base pairs:
2
Pseudoknot features
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