RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule NDB_00023
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
NDB_00023
Molecule name [
?
]:
LOW TEMPERATURE STRUCTURES OF DCPG-PROFLAVINE: CONFORMATIONAL AND HYDRATION EFFECTS
Source [
?
]:
Nucleic Acid Database
Source ID [
?
]:
ddb033
Reference [
?
]:
B.SCHNEIDER,S.L.GINELL,H.M.BERMAN. LOW TEMPERATURE STRUCTURES OF DCPG-PROFLAVINE: CONFORMATIONAL AND HYDRATION EFFECTS. BIOPHYS.J. V. 63 1572 1992 ASTM BIOJAU US ISSN 0006-3495
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
SYNTHETIC
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION RANGE HIGH (ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
2
Length [
?
]:
4
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
NDB_00013
,
NDB_00019
,
NDB_00020
,
NDB_00024
,
NDB_00032
,
NDB_00033
,
NDB_00034
,
NDB_00036
,
NDB_00038
,
NDB_00039
,
NDB_00040
,
NDB_00041
,
NDB_00042
,
NDB_00043
,
NDB_00044
,
NDB_00068
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
0
Number of paired bases [
?
]:
4
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
1
Number of base pairs in stems [
?
]:
2
Maximum length of a stem [
?
]:
2
Average length of a stem [
?
]:
2
Minimum length of a stem [
?
]:
2
Maximum estimated free energy [
?
]:
-2.4
Average estimated free energy [
?
]:
-2.4
Minimum estimated free energy [
?
]:
-2.4
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
0
Average number of free bases in hairpin loops [
?
]:
0
Minimum number of free bases in hairpin loop [
?
]:
0
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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