RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00025
(click to expand/contract all tables)

Format:

Molecule ID [?]:	NDB_00025
Molecule name [?]:	STRUCTURE OF 5'-D((BRO)CPGP(BRO)CPG)-3' IN COMPLEX WITH PROFLAVINE
Source [?]:	Nucleic Acid Database
Source ID [?]:	dddb06
Reference [?]:	E.WESTHOF,M.V.HOSUR,M.SUNDARALINGAM. NONINTERCALATIVE BINDING OF PROFLAVIN TO Z-DNA: STRUCTURE OF A COMPLEX BETWEEN D(5BRC-G-5BRC-G) AND PROFLAVIN. BIOCHEMISTRY V. 27 5742 1988 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.00 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	8
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: NDB_00037, NDB_00069
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	8

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	4
Maximum length of a stem [?]:	4
Average length of a stem [?]:	4
Minimum length of a stem [?]:	4
Maximum estimated free energy [?]:	-8.2
Average estimated free energy [?]:	-8.2
Minimum estimated free energy [?]:	-8.2

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features