RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00048
(click to expand/contract all tables)

Format:

Molecule ID [?]:	NDB_00048
Molecule name [?]:	CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA ELEMENT
Source [?]:	Nucleic Acid Database
Source ID [?]:	pdt009
Reference [?]:	J.L.KIM,D.B.NIKOLOV,S.K.BURLEY. CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA ELEMENT. NATURE V. 365 520 1993 ASTM NATUAS UK ISSN 0028-0836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.25 ANGSTROMS; ran through RNAview
Number of molecules [?]:	4
Length [?]:	56
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: NDB_00050
Number of domains [?]:	2
Number of unpaired bases [?]:	0
Number of paired bases [?]:	56

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	28
Maximum length of a stem [?]:	14
Average length of a stem [?]:	14
Minimum length of a stem [?]:	14
Maximum estimated free energy [?]:	-26.1
Average estimated free energy [?]:	-26.1
Minimum estimated free energy [?]:	-26.1

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features