RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00050
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Format:
Molecule ID [?]:NDB_00050
Molecule name [?]:1.9 A RESOLUTION REFINED STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF TATAAAAG
Source [?]:Nucleic Acid Database
Source ID [?]:pdt025
Reference [?]:J.L.KIM,S.K.BURLEY. 1.9 A RESOLUTION REFINED STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF TATAAAAG. NAT.STRUCT.BIOL. V. 1 638 1994 ASTM NSBIEW US ISSN 1072-8368
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.90 ANGSTROMS; ran through RNAview
Number of molecules [?]:4
Length [?]:56
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00048
Number of domains [?]:2
Number of unpaired bases [?]:0
Number of paired bases [?]:56

Click on any header below for additional features.

Stem features

Number of stems [?]:2
Number of base pairs in stems [?]:28
Maximum length of a stem [?]:14
Average length of a stem [?]:14
Minimum length of a stem [?]:14
Maximum estimated free energy [?]:-26.1
Average estimated free energy [?]:-26.1
Minimum estimated free energy [?]:-26.1

Hairpin loop features

Number of hairpin loops [?]:2
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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