RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00068 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: NDB_00068 Molecule name [?]: CRYSTAL AND MOLECULAR STRUCTURE OF THE AMMONIUM SALT OF THE DINUCLEOSIDE MONOPHOSPHATE D(CPG) Source [?]: Nucleic Acid Database Source ID [?]: zdb020 Reference [?]: B.RAMAKRISHNAN,M.A.VISWAMITRA. CRYSTAL AND MOLECULAR STRUCTURE OF THE AMMONIUM SALT OF THE DINUCLEOSIDE MONOPHOSPHATE D(CPG). J.BIOMOL.STRUCT.DYN. V. 6 511 1988 ASTM JBSDD6 US ISSN 0739-1102 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION RANGE HIGH (ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 4 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: NDB_00013, NDB_00019, NDB_00020, NDB_00023, NDB_00024, NDB_00032, NDB_00033, NDB_00034, NDB_00036, NDB_00038, NDB_00039, NDB_00040, NDB_00041, NDB_00042, NDB_00043, NDB_00044 Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 4

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 2 Maximum length of a stem [?]: 2 Average length of a stem [?]: 2 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.4 Average estimated free energy [?]: -2.4 Minimum estimated free energy [?]: -2.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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