RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule NDB_00071 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: NDB_00071 Molecule name [?]: STRUCTURAL CHARACTERISTICS OF ENANTIOMORPHIC DNA: CRYSTAL ANALYSIS OF RACEMATES OF THE D(CGCGCG) DUP Source [?]: Nucleic Acid Database Source ID [?]: zdf040 Reference [?]: M.DOI,M.INOUE,K.TOMOO,T.ISHIDA,Y.UEDA,M.AKAGI, H.URATA. STRUCTURAL CHARACTERISTICS OF ENANTIOMORPHIC DNA: CRYSTAL ANALYSIS OF RACEMATES OF THE D(CGCGCG) DUPLEX. J.AM.CHEM.SOC. V. 115 10432 1993 ASTM JACSAT US ISSN 0002-7863 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.2 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 12 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: NDB_00072, NDB_00075, PDB_00455, PDB_00639, PDB_00188, PDB_00729, PDB_01288 Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 12

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 6 Maximum length of a stem [?]: 6 Average length of a stem [?]: 6 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -14 Average estimated free energy [?]: -14 Minimum estimated free energy [?]: -14

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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