RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00073
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00073
Molecule name [?]:AT BASE PAIRS ARE LESS STABLE THAN GC BASE PAIRS IN Z-DNA: THE CRYSTAL STRUCTURE OF D(M(5)CGTAM(5)CG
Source [?]:Nucleic Acid Database
Source ID [?]:zdfb06
Reference [?]:A.H.-J.WANG,T.HAKOSHIMA,G.A.VAN DER MAREL, J.H.VAN BOOM,A.RICH. AT BASE PAIRS ARE LESS STABLE THAN GC BASE PAIRS IN Z-DNA: THE CRYSTAL STRUCTURE OF D(M(5)CGTAM(5)CG). CELL(CAMBRIDGE,MASS.) V. 37 321 1984 ASTM CELLB5 US ISSN 0092-8674
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-RAY, RESOLUTION 1.20 ANGSTROMS; ran through RNAview
Number of molecules [?]:2
Length [?]:12
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00026
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:6
Maximum length of a stem [?]:6
Average length of a stem [?]:6
Minimum length of a stem [?]:6
Maximum estimated free energy [?]:-10.5
Average estimated free energy [?]:-10.5
Minimum estimated free energy [?]:-10.5

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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