RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00075
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00075
Molecule name [?]:NDB id zdfs33
Source [?]:Nucleic Acid Database
Source ID [?]:zdfs33
Reference [?]:H.ZHANG, G.A.VAN DER MAREL, J.H.VAN BOOM, A. H.-J.WANG. CONFORMATIONAL PERTURBATION OF THE ANTICANCER NUCLEOSIDE ARABINOSYLCYTOSINE ON Z-DNA: MOLECULAR STRUCTURE OF (ARAC-DG)3 AT 1.3 ANGSTROMS RESOLUTION. BIOPOLYMERS V. 32 1559 1992 ASTM BIPMAA US ISSN 0006-3525 0161
Type [?]:Unknown

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-Ray; ran through RNAview
Number of molecules [?]:4
Length [?]:12
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: NDB_00071, NDB_00072, PDB_00455, PDB_00639, PDB_00188, PDB_00729, PDB_01288
Number of domains [?]:2
Number of unpaired bases [?]:0
Number of paired bases [?]:12

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:2
Maximum length of a stem [?]:2
Average length of a stem [?]:2
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-2.4
Average estimated free energy [?]:-2.4
Minimum estimated free energy [?]:-2.4

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:2
Number of base pairs in bands:4
Maximum band length:2
Average band length:2
Minimum band length:2
Maximum number of bands per pseudoknot:2
Average number of bands per pseudoknot:2
Minimum number of bands per pseudoknot:2
Maximum number of un-bands:0
Average number of un-bands:0
Minimum number of un-bands:0
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:0
Average number of unpaired bases:0
Minimum number of unpaired bases:0
Several ways to remove minimum number of base pairs, per molecule:Yes
Minimum number of base pairs to remove, per molecule:2
Maximum number of base pairs to remove, per pseudoknot:2
Average number of base pairs to remove, per pseudoknot:2
Minimum number of base pairs to remove, per pseudoknot:2
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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