RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00011
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Format:

Molecule ID [?]:	PDB_00011
Molecule name [?]:	A-TRACT RNA DODECAMER, NMR, 12 STRUCTURES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1AL5
Reference [?]:	M.R.CONTE,G.L.CONN,T.BROWN,A.N.LANE. CONFORMATIONAL PROPERTIES AND THERMODYNAMICS OF THE RNA DUPLEX R(CGCAAAUUUGCG)2: COMPARISON WITH THE DNA ANALOGUE D(CGCAAATTTGCG)2.. NUCLEIC ACIDS RES. V. 25 2627 1997 ASTM NARHAD UK ISSN 0305-1048
Type [?]:	Other RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	2
Length [?]:	24
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	24

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	12
Maximum length of a stem [?]:	12
Average length of a stem [?]:	12
Minimum length of a stem [?]:	12
Maximum estimated free energy [?]:	-20.5
Average estimated free energy [?]:	-20.5
Minimum estimated free energy [?]:	-20.5

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features