RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00013 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00013 Molecule name [?]: IRON RESPONSIVE ELEMENT RNA HAIRPIN, NMR, 15 STRUCTURES Source [?]: RCSB Protein Data Bank Source ID [?]: 1AQO Reference [?]: K.J.ADDESS,J.P.BASILION,R.D.KLAUSNER,T.A.ROUAULT, A.PARDI. STRUCTURE AND DYNAMICS OF THE IRON RESPONSIVE ELEMENT RNA: IMPLICATIONS FOR BINDING OF THE RNA BY IRON REGULATORY BINDING PROTEINS.. J.MOL.BIOL. V. 274 72 1997 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 29 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00172 Number of domains [?]: 1 Number of unpaired bases [?]: 9 Number of paired bases [?]: 20

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 10 Maximum length of a stem [?]: 6 Average length of a stem [?]: 3.33 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -0.9 Average estimated free energy [?]: -4.63 Minimum estimated free energy [?]: -11.7

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 6 Average number of free bases in hairpin loops [?]: 6 Minimum number of free bases in hairpin loop [?]: 6

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 1 Average number of free bases in internal loops: 1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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