RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00017 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00017 Molecule name [?]: SOLUTION STRUCTURE OF THE HAIRPIN RIBOZYME LOOP B DOMAIN RNA, NMR, 10 STRUCTURES Source [?]: RCSB Protein Data Bank Source ID [?]: 1B36 Reference [?]: S.E.BUTCHER,F.H.ALLAIN,J.FEIGON. SOLUTION STRUCTURE OF THE LOOP B DOMAIN FROM THE HAIRPIN RIBOZYME.. NAT.STRUCT.BIOL. V. 6 212 1999 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Hairpin Ribozyme [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 38 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 8 Number of paired bases [?]: 30

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 15 Maximum length of a stem [?]: 8 Average length of a stem [?]: 7.5 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -11 Average estimated free energy [?]: -11.15 Minimum estimated free energy [?]: -11.3

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 4 Average number of free bases in internal loops: 3 Minimum number of free bases in internal loop: 2 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 2 Minimum internal loop absolute asymmetry: 2 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 2 Minimum internal loop relative asymmetry: 2

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 5 Total number of AA non-canonical base pairs: 1 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 2 Total number of CU non-canonical base pairs: 1

Pseudoknot features

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