RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00019
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00019
Molecule name [
?
]:
S8 RRNA BINDING SITE FROM E. COLI, NMR, 6 STRUCTURES
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1BGZ
Reference [
?
]:
K.KALURACHCHI,E.P.NIKONOWICZ. NMR STRUCTURE DETERMINATION OF THE BINDING SITE FOR RIBOSOMAL PROTEIN S8 FROM ESCHERICHIA COLI 16 S RRNA.. J.MOL.BIOL. V. 280 639 1998 ASTM JMOBAK UK ISSN 0022-2836
Type [
?
]:
Other Ribosomal RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
E. COLI
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
23
Fragments used [
?
]:
Yes
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
7
Number of paired bases [
?
]:
16
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
3
Number of base pairs in stems [
?
]:
8
Maximum length of a stem [
?
]:
4
Average length of a stem [
?
]:
2.67
Minimum length of a stem [
?
]:
2
Maximum estimated free energy [
?
]:
-2.1
Average estimated free energy [
?
]:
-4.53
Minimum estimated free energy [
?
]:
-9
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
4
Average number of free bases in hairpin loops [
?
]:
4
Minimum number of free bases in hairpin loop [
?
]:
4
Total number of UUCG hairpin motifs per molecule [
?
]:
1
Bulge loop features
Number of bulge loops [
?
]:
2
Maximum number of free bases in bulge loops [
?
]:
2
Average number of free bases in bulge loops [
?
]:
0.75
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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