RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00019
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00019
Molecule name [?]:S8 RRNA BINDING SITE FROM E. COLI, NMR, 6 STRUCTURES
Source [?]:RCSB Protein Data Bank
Source ID [?]:1BGZ
Reference [?]:K.KALURACHCHI,E.P.NIKONOWICZ. NMR STRUCTURE DETERMINATION OF THE BINDING SITE FOR RIBOSOMAL PROTEIN S8 FROM ESCHERICHIA COLI 16 S RRNA.. J.MOL.BIOL. V. 280 639 1998 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:Other Ribosomal RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:E. COLI
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:23
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:7
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:3
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:4
Average length of a stem [?]:2.67
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-2.1
Average estimated free energy [?]:-4.53
Minimum estimated free energy [?]:-9

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:4
Average number of free bases in hairpin loops [?]:4
Minimum number of free bases in hairpin loop [?]:4
Total number of UUCG hairpin motifs per molecule [?]:1

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:2
Average number of free bases in bulge loops [?]:0.75
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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