RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00031
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00031
Molecule name [?]:	SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE- PAIR
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1C4L
Reference [?]:	Y.TANAKA,C.KOJIMA,T.YAMAZAKI,T.S.KODAMA,K.YASUNO, S.MIYASHITA,A.ONO,A.ONO,M.KAINOSHO,Y.KYOGOKU. SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE PAIR.. BIOCHEMISTRY V. 39 7074 2000 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	2
Length [?]:	18
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	18

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	9
Maximum length of a stem [?]:	9
Average length of a stem [?]:	9
Minimum length of a stem [?]:	9
Maximum estimated free energy [?]:	-14.5
Average estimated free energy [?]:	-14.5
Minimum estimated free energy [?]:	-14.5

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of CU non-canonical base pairs:	1

Pseudoknot features